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naturepoker
binomicalabs.org
did:plc:krwu7cnxupg7wfayzggrp3jt
For people with hmmalign experience. When running post-alignment trim (i.e. clipkit/trimal), how do you handle insertion gap added by hmmalign?
AFAIK many trimmers don't count '.' as AA gap character - and manually adjusting '.' to recognized gap character can significantly alter results 💻🧬🦠🧫
2025-05-10T00:23:18.544Z