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Ragnar {Groot Koerkamp}
curiouscoding.nl
did:plc:olhpu3lwhpafue3jjmhat4mj
Little writeup on the speed of fasta parsers, at last.
Basically: both needletail and paraseq are process input linearly, and thus have a limit around 4 GB/s.
By giving each thread its own slice of the input file, we're limited by RAM bandwidth instead :)
https://curiouscoding.nl/posts/fasta-parsing/
2025-08-06T17:42:26.206Z