PI of the machine learning for Integrative genomics lab @pasteur.fr and @CNRS.bsky.social #NewPI #DiversityEqualityInclusion Single-cell, multi-omics, machine learninghttps://bsky.app/profile/cantinilab.bsky.socialhttps://bsky.app/profile/cantinilab.bsky.social/post/3mlnf77ozzk22📢 We are recruiting! We are looking for postdoctoral researchers to join my team at @pasteur.fr (https://research.pasteur.fr/en/team/machine-learning-for-integrative-genomics/). We develop AI methods to infer cellular dynamics and gene regulation. If you are interested, send me an email with your CV. We look forward to hearing from you!12 May 2026 08:38 +0000at://did:plc:7pn46t3yefv2gueuigetsh7f/app.bsky.feed.post/3mlnf77ozzk22https://bsky.app/profile/cantinilab.bsky.social/post/3mlbhvb2orc2p🚨 New preprint from the lab out! Led by Jules Samaran, we present CHAMPOLLION, a new method designed for bridge integration, i.e. aligning unimodal datasets using a paired multi-omic reference. 📄 Preprint: https://www.biorxiv.org/content/10.64898/2026.04.28.721317v1 💻 Code: https://github.com/cantinilab/champollion07 May 2026 14:54 +0000at://did:plc:7pn46t3yefv2gueuigetsh7f/app.bsky.feed.post/3mlbhvb2orc2phttps://bsky.app/profile/cantinilab.bsky.social/post/3mgmhm77vn225Kicking off the AI for Life Sciences course at @institutpasteur.bsky.social today! 🧬🤖 Special thanks to @bonomimax.bsky.social and Ernest Mordret for the co-organization, to the @pasteuredu.bsky.social and all the trainers. Excited to dive into how algorithms can help us understand life!09 Mar 2026 08:43 +0000at://did:plc:7pn46t3yefv2gueuigetsh7f/app.bsky.feed.post/3mgmhm77vn225https://bsky.app/profile/cantinilab.bsky.social/post/3mdmyfvawjc2cPhD position in my team at @pasteur.fr ! The selected canddiate will work on the development of new methods combining biophysicial and machine learning modelling for single-cell multi-omics spatiotemporal data. https://emploi.cnrs.fr/Offres/Doctorant/UMR3738-DEBPHI-006/Default.aspx?lang=EN30 Jan 2026 09:28 +0000at://did:plc:7pn46t3yefv2gueuigetsh7f/app.bsky.feed.post/3mdmyfvawjc2chttps://bsky.app/profile/cantinilab.bsky.social/post/3mdkzbwbk4c2qNew preprint from my team! led by @remitrimbour.bsky.social in collaboration with the @saezlab.bsky.social, we developped ReCoN a new method to model multicellular coordination and its underlying molecular mechanisms. 📜 Paper: lnkd.in/eJ8SfFNH 💻 Code: lnkd.in/e-qx2iNp https://lnkd.in/eJ8SfFNH29 Jan 2026 14:38 +0000at://did:plc:7pn46t3yefv2gueuigetsh7f/app.bsky.feed.post/3mdkzbwbk4c2qhttps://bsky.app/profile/cantinilab.bsky.social/post/3mcwzmyq7ck26Two postdoc positions opened in my team @pasteur.fr in Paris on the development of machine learning methods for single-cell multi-omics spatiotemporal data. See the announcement for all details https://emploi.cnrs.fr/Offres/CDD/UMR3738-DEBPHI-004/Default.aspx?lang=EN21 Jan 2026 15:51 +0000at://did:plc:7pn46t3yefv2gueuigetsh7f/app.bsky.feed.post/3mcwzmyq7ck26https://bsky.app/profile/cantinilab.bsky.social/post/3ma6w2ducus2fNew preprint from my team! Led by @jkobject.com "scPRINT-2: Towards the next-generation of cell foundation models and benchmarks" We perform an additive benchmark of single-cell Foundation Models (scFMs) and we present scPRINT-2 pre-trained on 350 million cells 📝 https://www.biorxiv.org/content/10.64898/2025.12.11.693702v117 Dec 2025 14:53 +0000at://did:plc:7pn46t3yefv2gueuigetsh7f/app.bsky.feed.post/3ma6w2ducus2fhttps://bsky.app/profile/cantinilab.bsky.social/post/3m4ryxiimvs23Happy to share STORIES out now on Nature Methods STORIES learns cell fate landscapes from spatial tramscripromics data profiled at several time points, thus allowing prediction of future cell states. Led by Geert-Jan Huizing and Jules Samaran https://www.nature.com/articles/s41592-025-02855-4 @pasteur.fr04 Nov 2025 07:25 +0000at://did:plc:7pn46t3yefv2gueuigetsh7f/app.bsky.feed.post/3m4ryxiimvs23https://bsky.app/profile/cantinilab.bsky.social/post/3m22u7s5zxk2lCIRCE out on biorxiv, give it a try for inferring peak co-accessibility networks from large single-cell data! [contains quote post or other embedded content]30 Sep 2025 15:38 +0000at://did:plc:7pn46t3yefv2gueuigetsh7f/app.bsky.feed.post/3m22u7s5zxk2l