This Python package is your Swiss army knife for bioinformatics. It allows easy and fast analysis of sequence and biomolecular structure data.https://bsky.app/profile/biotite.bsky.socialhttps://bsky.app/profile/biotite.bsky.social/post/3lkimzcejss2tBiotite 1.2 connects to the bioinformatics ecosystem with seamless interfaces to @rdkit.bsky.social, #PyMOL and @openmm.org. Below you see a simple MD simulation of lysozyme combining the interfaces to OpenMM and PyMOL. The full changelog is available at https://github.com/biotite-dev/biotite/releases #Bioinformatics16 Mar 2025 12:23 +0000at://did:plc:e5mkx5sgurzvdbfhrqdij655/app.bsky.feed.post/3lkimzcejss2thttps://bsky.app/profile/biotite.bsky.social/post/3lkimh2sgjk2yBiotite 1.2 provides new tools for the evaluation of structure predictions, namely lDDT and TM-score. Download of structure models from @ebi.embl.org #AlphaFold DB is also possible. #Bioinformatics16 Mar 2025 12:13 +0000at://did:plc:e5mkx5sgurzvdbfhrqdij655/app.bsky.feed.post/3lkimh2sgjk2yhttps://bsky.app/profile/biotite.bsky.social/post/3leoehp4eg22tPlaying with the new WIP interface from @biotite.bsky.social to @rdkit.bsky.social. Here an AtomArray for a cyclotide protein was converted into a Mol object with a single function call. #Bioinformatics #Cheminformatics01 Jan 2025 10:35 +0000at://did:plc:e5mkx5sgurzvdbfhrqdij655/app.bsky.feed.post/3leoehp4eg22thttps://bsky.app/profile/biotite.bsky.social/post/3le4zps4jgk2sBiotite 1.1 is now out and unleashes Biotite's alignment functions on more data! Now you can use position-specific scoring matrices for sequence profiles and convert structures to structural alphabets, such as the popular Foldseek 3Di alphabet. https://github.com/biotite-dev/biotite/releases #Bioinformatics25 Dec 2024 13:08 +0000at://did:plc:e5mkx5sgurzvdbfhrqdij655/app.bsky.feed.post/3le4zps4jgk2shttps://bsky.app/profile/biotite.bsky.social/post/3l2papx7fui2mBiotite 1.0 has been finally released! A big thanks to all contributors who helped building this package! Besides the removal of deprecated API, this packages brings support for NumPy 2.x and a brand new documentation design: www.biotite-python.org. https://www.biotite-python.org27 Aug 2024 12:49 +0000at://did:plc:e5mkx5sgurzvdbfhrqdij655/app.bsky.feed.post/3l2papx7fui2m