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Post
Jim Shaw
jimshaw.bsky.social
did:plc:irnc2rqp4oued7btjofpmke5
The process of benchmarking taxonomic profilers is insane
Microbial classifications change like crazy, different taxonomies (GTDB, NCBI), marker gene methods have their own arbitrary species clusters etc etc
A random test gave 80-90% precision for a method, almost all FPs are due to name changes
2023-09-24T13:37:46.581Z